PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 294aa    MW: 34847.2 Da    PI: 7.0775
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133240.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.36.3e-2644126186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +e+++Li++r e+++++ ++k++k lWe vs+kmr++ f rsp+qCk+kw+nl +r+k +++++ +    +++++p++d++e
  XP_009133240.1  44 QWSLEETKELIAIRGELDQTFMETKRNKLLWEVVSNKMRDKSFLRSPEQCKCKWKNLVTRFKGCETMDAES---ARQQFPFYDDME 126
                     7********************************************************************84...45689*****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001841103IPR001005SANT/Myb domain
CDDcd122034.01E-2243108No hitNo description
PfamPF138374.8E-2044126No hitNo description
PROSITE profilePS500907.53845101IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDGHQHQLHH LQYLKKHSHH VHPQSQTPEI ASPATVAAGD RFPQWSLEET KELIAIRGEL  60
DQTFMETKRN KLLWEVVSNK MRDKSFLRSP EQCKCKWKNL VTRFKGCETM DAESARQQFP  120
FYDDMEIIFT SRMQRMIWVE SEGGGGGASG TTRKRSHSEQ FSSDEEEENV NEELVDISND  180
PKIPNPKKNI VKKRKGGISN SNASNSVREV LDEFMRHQMR MENEWIERWE AREKERAERE  240
EEWRGKMEEI EKERVKMERM WRDREDQRRS REEMKAEKRD SLISALLAKL TRDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A1e-1341122384DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185194PKKNIVKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4535820.0AF453582.1 Arabidopsis thaliana GT-1 like transcription factor (GT1L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133240.10.0PREDICTED: trihelix transcription factor GT-3b-like
RefseqXP_013740623.10.0PREDICTED: trihelix transcription factor GT-3b-like
SwissprotO804501e-124TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLM4C7680.0M4C768_BRARP; Uncharacterized protein
STRINGBra000046.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.12e-88Trihelix family protein